References |
1. |
Aarreberg
LD
,
Esser‐Nobis
K
,
Driscoll
C
,
Shuvarikov
A
,
Roby
JA
,
Gale
M
Jr
.
Interleukin‐1beta induces mtDNA release to activate innate immune signaling via cGAS‐STING
.
Mol Cell
74
:
801
‐
815 e806
,
2019
.
|
2. |
Abusamra
R
,
McShane
D
.
Is deafness mutation screening required in cystic fibrosis patients?
Paediatr Respir Rev
20
(
Suppl
):
24
‐
26
,
2016
.
|
3. |
Ahmad
T
,
Sundar
IK
,
Lerner
CA
,
Gerloff
J
,
Tormos
AM
,
Yao
H
,
Rahman
I
.
Impaired mitophagy leads to cigarette smoke stress‐induced cellular senescence: Implications for chronic obstructive pulmonary disease
.
FASEB J
29
:
2912
‐
2929
,
2015
.
|
4. |
An
R
,
Merrill
D
,
Avramova
L
,
Sturgis
J
,
Tsiper
M
,
Robinson
JP
,
Turek
J
,
Nolte
DD
.
Phenotypic profiling of Raf inhibitors and mitochondrial toxicity in 3D tissue using biodynamic imaging
.
J Biomol Screen
19
:
526
‐
537
,
2014
.
|
5. |
Archer
SL
.
Acquired mitochondrial abnormalities, including epigenetic inhibition of superoxide dismutase 2, in pulmonary hypertension and cancer: Therapeutic implications
.
Adv Exp Med Biol
903
:
29
‐
53
,
2016
.
|
6. |
Aryaman
J
,
Johnston
IG
,
Jones
NS
.
Mitochondrial heterogeneity
.
Front Genet
9
:
718
,
2018
.
|
7. |
Aswani
A
,
Manson
J
,
Itagaki
K
,
Chiazza
F
,
Collino
M
,
Wupeng
WL
,
Chan
TK
,
Wong
WSF
,
Hauser
CJ
,
Thiemermann
C
,
Brohi
K
.
Scavenging circulating mitochondrial DNA as a potential therapeutic option for multiple organ dysfunction in trauma hemorrhage
.
Front Immunol
9
:
891
,
2018
.
|
8. |
Balfour‐Lynn
IM
,
Welch
K
.
Inhaled corticosteroids for cystic fibrosis
.
Cochrane Database Syst Rev
:
CD001915
,
2016
.
|
9. |
Barlow
CA
,
Lievense
L
,
Gross
S
,
Ronk
CJ
,
Paustenbach
DJ
.
The role of genotoxicity in asbestos‐induced mesothelioma: An explanation for the differences in carcinogenic potential among fiber types
.
Inhal Toxicol
25
:
553
‐
567
,
2013
.
|
10. |
Barshad
G
,
Marom
S
,
Cohen
T
,
Mishmar
D
.
Mitochondrial DNA transcription and its regulation: An evolutionary perspective
.
Trends Genet
34
:
682
‐
692
,
2018
.
|
11. |
Belleudi
V
,
Di Martino
M
,
Cascini
S
,
Kirchmayer
U
,
Pistelli
R
,
Formoso
G
,
Fusco
D
,
Davoli
M
,
Agabiti
N
,
Group
OS
.
The impact of adherence to inhaled drugs on 5‐year survival in COPD patients: A time dependent approach
.
Pharmacoepidemiol Drug Saf
25
:
1295
‐
1304
,
2016
.
|
12. |
Benmerzoug
S
,
Ryffel
B
,
Togbe
D
,
Quesniaux
VFJ
.
Self‐DNA sensing in lung inflammatory diseases
.
Trends Immunol
40
:
719
‐
734
,
2019
.
|
13. |
Bhargava
A
,
Tamrakar
S
,
Aglawe
A
,
Lad
H
,
Srivastava
RK
,
Mishra
DK
,
Tiwari
R
,
Chaudhury
K
,
Goryacheva
IY
,
Mishra
PK
.
Ultrafine particulate matter impairs mitochondrial redox homeostasis and activates phosphatidylinositol 3‐kinase mediated DNA damage responses in lymphocytes
.
Environ Pollut
234
:
406
‐
419
,
2018
.
|
14. |
Birch‐Machin
MA
,
Bowman
A
.
Oxidative stress and ageing
.
Br J Dermatol
175
,
Suppl 2
:
26
‐
29
,
2016
.
|
15. |
Birch‐Machin
MA
,
Russell
EV
,
Latimer
JA
.
Mitochondrial DNA damage as a biomarker for ultraviolet radiation exposure and oxidative stress
.
Br J Dermatol
169
,
Suppl 2
:
9
‐
14
,
2013
.
|
16. |
Bobba
A
,
Giannattasio
S
,
Pucci
A
,
Lippolis
R
,
Camaschella
C
,
Marra
E
.
Characterization of mitochondrial DNA in primary cardiomyopathies
.
Clin Chim Acta
243
:
181
‐
189
,
1995
.
|
17. |
Brunyanszki
A
,
Szczesny
B
,
Virag
L
,
Szabo
C
.
Mitochondrial poly(ADP‐ribose) polymerase: The Wizard of Oz at work
.
Free Radic Biol Med
100
:
257
‐
270
,
2016
.
|
18. |
Burki
TK
.
The global cost of tuberculosis
.
Lancet Respir Med
6
:
13
,
2018
.
|
19. |
Cardenes
N
,
Corey
C
,
Geary
L
,
Jain
S
,
Zharikov
S
,
Barge
S
,
Novelli
EM
,
Shiva
S
.
Platelet bioenergetic screen in sickle cell patients reveals mitochondrial complex V inhibition, which contributes to platelet activation
.
Blood
123
:
2864
‐
2872
,
2014
.
|
20. |
Carpagnano
GE
,
Lacedonia
D
,
Malerba
M
,
Palmiotti
GA
,
Cotugno
G
,
Carone
M
,
Foschino‐Barbaro
MP
.
Analysis of mitochondrial DNA alteration in new phenotype ACOS
.
BMC Pulm Med
16
:
31
,
2016
.
|
21. |
Chipps
BE
.
Inhaled corticosteroid therapy for patients with persistent asthma: Learnings from studies of inhaled budesonide
.
Allergy Asthma Proc
30
:
217
‐
228
,
2009
.
|
22. |
Cho
HY
,
Kleeberger
SR
.
Mitochondrial biology in airway pathogenesis and the role of NRF2
.
Arch Pharm Res
,
2019
.
|
23. |
Cho
HY
,
Miller‐DeGraff
L
,
Blankenship‐Paris
T
,
Wang
X
,
Bell
DA
,
Lih
F
,
Deterding
L
,
Panduri
V
,
Morgan
DL
,
Yamamoto
M
,
Reddy
AJ
,
Talalay
P
,
Kleeberger
SR
.
Sulforaphane enriched transcriptome of lung mitochondrial energy metabolism and provided pulmonary injury protection via Nrf2 in mice
.
Toxicol Appl Pharmacol
364
:
29
‐
44
,
2019
.
|
24. |
Chow
LWC
,
Cheng
KS
,
Leong
F
,
Cheung
CW
,
Shiao
LR
,
Leung
YM
,
Wong
KL
.
Enhancing tetrandrine cytotoxicity in human lung carcinoma A549 cells by suppressing mitochondrial ATP production
.
Naunyn Schmiedeberg's Arch Pharmacol
392
:
427
‐
436
,
2019
.
|
25. |
Cloonan
SM
,
Choi
AM
.
Mitochondria in lung disease
.
J Clin Invest
126
:
809
‐
820
,
2016
.
|
26. |
Comhair
SA
,
Ricci
KS
,
Arroliga
M
,
Lara
AR
,
Dweik
RA
,
Song
W
,
Hazen
SL
,
Bleecker
ER
,
Busse
WW
,
Chung
KF
,
Gaston
B
,
Hastie
A
,
Hew
M
,
Jarjour
N
,
Moore
W
,
Peters
S
,
Teague
WG
,
Wenzel
SE
,
Erzurum
SC
.
Correlation of systemic superoxide dismutase deficiency to airflow obstruction in asthma
.
Am J Respir Crit Care Med
172
:
306
‐
313
,
2005
.
|
27. |
Conrad
DJ
,
Stenbit
AE
,
Zettner
EM
,
Wick
I
,
Eckhardt
C
,
Hardiman
G
.
Frequency of mitochondrial 12S ribosomal RNA variants in an adult cystic fibrosis population
.
Pharmacogenet Genomics
18
:
1095
‐
1102
,
2008
.
|
28. |
Contreras
L
,
Drago
I
,
Zampese
E
,
Pozzan
T
.
Mitochondria: The calcium connection
.
Biochim Biophys Acta
1797
:
607
‐
618
,
2010
.
|
29. |
Cordero
MD
,
Alcocer‐Gomez
E
,
Marin‐Aguilar
F
,
Rybkina
T
,
Cotan
D
,
Perez‐Pulido
A
,
Alvarez‐Suarez
JM
,
Battino
M
,
Sanchez‐Alcazar
JA
,
Carrion
AM
,
Culic
O
,
Navarro‐Pando
JM
,
Bullon
P
.
Mutation in cytochrome b gene of mitochondrial DNA in a family with fibromyalgia is associated with NLRP3‐inflammasome activation
.
J Med Genet
53
:
113
‐
122
,
2016
.
|
30. |
Cortassa
S
,
O'Rourke
B
,
Aon
MA
.
Redox‐optimized ROS balance and the relationship between mitochondrial respiration and ROS
.
Biochim Biophys Acta
1837
:
287
‐
295
,
2014
.
|
31. |
Cortopassi
G
,
Wang
E
.
Modelling the effects of age‐related mtDNA mutation accumulation; complex I deficiency, superoxide and cell death
.
Biochim Biophys Acta
1271
:
171
‐
176
,
1995
.
|
32. |
Dahal
S
,
Dubey
S
,
Raghavan
SC
.
Homologous recombination‐mediated repair of DNA double‐strand breaks operates in mammalian mitochondria
.
Cell Mol Life Sci
75
:
1641
‐
1655
,
2018
.
|
33. |
De Raeve
HR
,
Thunnissen
FB
,
Kaneko
FT
,
Guo
FH
,
Lewis
M
,
Kavuru
MS
,
Secic
M
,
Thomassen
MJ
,
Erzurum
SC
.
Decreased Cu, Zn‐SOD activity in asthmatic airway epithelium: Correction by inhaled corticosteroid in vivo
.
Am J Physiol
272
:
L148
‐
L154
,
1997
.
|
34. |
Dejmek
J
,
Kohoutova
M
,
Kripnerova
M
,
Cedikova
M
,
Tuma
Z
,
Babuska
V
,
Bolek
L
,
Kuncova
J
.
Repeated exposure to hyperbaric hyperoxia affects mitochondrial functions of the lung fibroblasts
.
Physiol Res
67
:
S633
‐
S643
,
2018
.
|
35. |
Diamantopoulos
A
,
Wright
E
,
Vlahopoulou
K
,
Cornic
L
,
Schoof
N
,
Maher
TM
.
The burden of illness of idiopathic pulmonary fibrosis: A comprehensive evidence review
.
PharmacoEconomics
36
:
779
‐
807
,
2018
.
|
36. |
Ding
C
,
Li
R
,
Wang
P
,
Jin
P
,
Li
S
,
Guo
Z
.
Identification of sequence polymorphisms in the D‐loop region of mitochondrial DNA as a risk factor for lung cancer
.
Mitochondrial DNA
23
:
251
‐
254
,
2012
.
|
37. |
Duan
M
,
Tu
J
,
Lu
Z
.
Recent advances in detecting mitochondrial DNA heteroplasmic variations
.
Molecules
23
:
2018
.
|
38. |
El‐Hattab
AW
,
Adesina
AM
,
Jones
J
,
Scaglia
F
.
MELAS syndrome: Clinical manifestations, pathogenesis, and treatment options
.
Mol Genet Metab
116
:
4
‐
12
,
2015
.
|
39. |
Ellenrieder
L
,
Dieterle
MP
,
Doan
KN
,
Martensson
CU
,
Floerchinger
A
,
Campo
ML
,
Pfanner
N
,
Becker
T
.
Dual role of mitochondrial porin in metabolite transport across the outer membrane and protein transfer to the inner membrane
.
Mol Cell
73
:
1056
‐
1065 e1057
,
2019
.
|
40. |
Eshaghian
A
,
Vleugels
RA
,
Canter
JA
,
McDonald
MA
,
Stasko
T
,
Sligh
JE
.
Mitochondrial DNA deletions serve as biomarkers of aging in the skin, but are typically absent in nonmelanoma skin cancers
.
J Invest Dermatol
126
:
336
‐
344
,
2006
.
|
41. |
Fan
W
,
Zhu
Y
,
Tang
X
,
Xue
L
.
Noninvasive test for mitochondrial DNA A1555G mutation associated with deafness
.
Clin Lab
63
:
127
‐
131
,
2017
.
|
42. |
Fang
EF
,
Scheibye‐Knudsen
M
,
Chua
KF
,
Mattson
MP
,
Croteau
DL
,
Bohr
VA
.
Nuclear DNA damage signalling to mitochondria in ageing
.
Nat Rev Mol Cell Biol
17
:
308
‐
321
,
2016
.
|
43. |
Fetterman
JL
,
Sammy
MJ
,
Ballinger
SW
.
Mitochondrial toxicity of tobacco smoke and air pollution
.
Toxicology
391
:
18
‐
33
,
2017
.
|
44. |
Flaquer
A
,
Heinzmann
A
,
Rospleszcz
S
,
Mailaparambil
B
,
Dietrich
H
,
Strauch
K
,
Grychtol
R
.
Association study of mitochondrial genetic polymorphisms in asthmatic children
.
Mitochondrion
14
:
49
‐
53
,
2014
.
|
45. |
Ford
ES
,
Murphy
LB
,
Khavjou
O
,
Giles
WH
,
Holt
JB
,
Croft
JB
.
Total and state‐specific medical and absenteeism costs of COPD among adults aged >/= 18 years in the United States for 2010 and projections through 2020
.
Chest
147
:
31
‐
45
,
2015
.
|
46. |
Fu
H
,
Zhang
T
,
Huang
R
,
Yang
Z
,
Liu
C
,
Li
M
,
Fang
F
,
Xu
F
.
Calcitonin gene‐related peptide protects type II alveolar epithelial cells from hyperoxia‐induced DNA damage and cell death
.
Exp Ther Med
13
:
1279
‐
1284
,
2017
.
|
47. |
Fu
WP
,
Zhao
ZH
,
Zhong
L
,
Liu
L
,
Zhao
YL
,
Wang
XM
,
Qiu
YH
,
Dai
LM
.
Relationship between mitochondrial cytochrome oxidase mRNA expression and maternal inheritance of asthma
.
Zhonghua Yi Xue Za Zhi
93
:
2191
‐
2194
,
2013
.
|
48. |
Ganini
D
,
Santos
JH
,
Bonini
MG
,
Mason
RP
.
Switch of mitochondrial superoxide dismutase into a prooxidant peroxidase in manganese‐deficient cells and mice
.
Cell Chem Biol
25
:
413
‐
425 e416
,
2018
.
|
49. |
Gerace
L
,
Huber
MD
.
Nuclear lamina at the crossroads of the cytoplasm and nucleus
.
J Struct Biol
177
:
24
‐
31
,
2012
.
|
50. |
Goldstein
A
,
Falk
MJ
.
Mitochondrial DNA deletion syndromes
. In:
Adam
MP
,
Ardinger
HH
,
Pagon
RA
,
Wallace
SE
,
Bean
LJH
,
Stephens
K
,
Amemiya
A
, editors.
Seattle, WA
:
GeneReviews
®
[Internet]
,
1993
.
|
51. |
Gong
F
,
Miller
KM
.
Histone methylation and the DNA damage response
.
Mutat Res
780
:
37
‐
47
,
2019
.
|
52. |
Goss
KN
,
Kumari
S
,
Tetri
LH
,
Barton
G
,
Braun
RK
,
Hacker
TA
,
Eldridge
MW
.
Postnatal hyperoxia exposure durably impairs right ventricular function and mitochondrial biogenesis
.
Am J Respir Cell Mol Biol
56
:
609
‐
619
,
2017
.
|
53. |
Grivennikova
VG
,
Vinogradov
AD
.
Mitochondrial production of reactive oxygen species
.
Biochemistry (Mosc)
78
:
1490
‐
1511
,
2013
.
|
54. |
Gu
X
,
Yao
Y
,
Wu
G
,
Lv
T
,
Luo
L
,
Song
Y
.
The plasma mitochondrial DNA is an independent predictor for post‐traumatic systemic inflammatory response syndrome
.
PLoS One
8
:
e72834
,
2013
.
|
55. |
Gureev
AP
,
Shaforostova
EA
,
Starkov
AA
,
Popov
VN
.
Simplified qPCR method for detecting excessive mtDNA damage induced by exogenous factors
.
Toxicology
382
:
67
‐
74
,
2017
.
|
56. |
Hagstrom
E
,
Freyer
C
,
Battersby
BJ
,
Stewart
JB
,
Larsson
NG
.
No recombination of mtDNA after heteroplasmy for 50 generations in the mouse maternal germline
.
Nucleic Acids Res
42
:
1111
‐
1116
,
2014
.
|
57. |
Hao
Z
,
Wu
T
,
Cui
X
,
Zhu
P
,
Tan
C
,
Dou
X
,
Hsu
KW
,
Lin
YT
,
Peng
PH
,
Zhang
LS
,
Gao
Y
,
Hu
L
,
Sun
HL
,
Zhu
A
,
Liu
J
,
Wu
KJ
,
He
C
.
N(6)‐deoxyadenosine methylation in mammalian mitochondrial DNA
.
Mol Cell
78
:
382
‐
395 e388
,
2020
.
|
58. |
Harrington
JS
,
Huh
JW
,
Schenck
EJ
,
Nakahira
K
,
Siempos
II
,
Choi
AMK
.
Circulating mitochondrial DNA as predictor of mortality in critically Ill patients: A systematic review of clinical studies
.
Chest
156
:
1120
‐
1136
,
2019
.
|
59. |
Hashizume
M
,
Mouner
M
,
Chouteau
JM
,
Gorodnya
OM
,
Ruchko
MV
,
Potter
BJ
,
Wilson
GL
,
Gillespie
MN
,
Parker
JC
.
Mitochondrial‐targeted DNA repair enzyme 8‐oxoguanine DNA glycosylase 1 protects against ventilator‐induced lung injury in intact mice
.
Am J Physiol Lung Cell Mol Physiol
304
:
L287
‐
L297
,
2013
.
|
60. |
Hong
EE
,
Okitsu
CY
,
Smith
AD
,
Hsieh
CL
.
Regionally specific and genome‐wide analyses conclusively demonstrate the absence of CpG methylation in human mitochondrial DNA
.
Mol Cell Biol
33
:
2683
‐
2690
,
2013
.
|
61. |
Hou
L
,
Zhang
X
,
Dioni
L
,
Barretta
F
,
Dou
C
,
Zheng
Y
,
Hoxha
M
,
Bertazzi
PA
,
Schwartz
J
,
Wu
S
,
Wang
S
,
Baccarelli
AA
.
Inhalable particulate matter and mitochondrial DNA copy number in highly exposed individuals in Beijing, China: A repeated‐measure study
.
Part Fibre Toxicol
10
:
17
,
2013
.
|
62. |
Hou
L
,
Zhu
ZZ
,
Zhang
X
,
Nordio
F
,
Bonzini
M
,
Schwartz
J
,
Hoxha
M
,
Dioni
L
,
Marinelli
B
,
Pegoraro
V
,
Apostoli
P
,
Bertazzi
PA
,
Baccarelli
A
.
Airborne particulate matter and mitochondrial damage: A cross‐sectional study
.
Environ Health
9
:
48
,
2010
.
|
63. |
Hsia
CC
,
Hyde
DM
,
Weibel
ER
.
Lung structure and the intrinsic challenges of gas exchange
.
Compr Physiol
6
:
827
‐
895
,
2016
.
|
64. |
Huang
K
,
Yang
T
,
Xu
J
,
Yang
L
,
Zhao
J
,
Zhang
X
,
Bai
C
,
Kang
J
,
Ran
P
,
Shen
H
,
Wen
F
,
Chen
Y
,
Sun
T
,
Shan
G
,
Lin
Y
,
Xu
G
,
Wu
S
,
Wang
C
,
Wang
R
,
Shi
Z
,
Xu
Y
,
Ye
X
,
Song
Y
,
Wang
Q
,
Zhou
Y
,
Li
W
,
Ding
L
,
Wan
C
,
Yao
W
,
Guo
Y
,
Xiao
F
,
Lu
Y
,
Peng
X
,
Zhang
B
,
Xiao
D
,
Wang
Z
,
Chen
Z
,
Bu
X
,
Zhang
H
,
Zhang
X
,
An
L
,
Zhang
S
,
Zhu
J
,
Cao
Z
,
Zhan
Q
,
Yang
Y
,
Liang
L
,
Tong
X
,
Dai
H
,
Cao
B
,
Wu
T
,
Chung
KF
,
He
J
,
Wang
C
,
China Pulmonary Health Study G
.
Prevalence, risk factors, and management of asthma in China: A national cross‐sectional study
.
Lancet
394
:
407
‐
418
,
2019
.
|
65. |
Huang
Y
,
He
T
,
Domann
FE
.
Decreased expression of manganese superoxide dismutase in transformed cells is associated with increased cytosine methylation of the SOD2 gene
.
DNA Cell Biol
18
:
643
‐
652
,
1999
.
|
66. |
Hukkanen
J
,
Pelkonen
O
,
Hakkola
J
,
Raunio
H
.
Expression and regulation of xenobiotic‐metabolizing cytochrome P450 (CYP) enzymes in human lung
.
Crit Rev Toxicol
32
:
391
‐
411
,
2002
.
|
67. |
Hurt
EM
,
Thomas
SB
,
Peng
B
,
Farrar
WL
.
Molecular consequences of SOD2 expression in epigenetically silenced pancreatic carcinoma cell lines
.
Br J Cancer
97
:
1116
‐
1123
,
2007
.
|
68. |
Hussain
S
,
Sangtian
S
,
Anderson
SM
,
Snyder
RJ
,
Marshburn
JD
,
Rice
AB
,
Bonner
JC
,
Garantziotis
S
.
Inflammasome activation in airway epithelial cells after multi‐walled carbon nanotube exposure mediates a profibrotic response in lung fibroblasts
.
Part Fibre Toxicol
11
:
28
,
2014
.
|
69. |
Ito
S
,
Araya
J
,
Kurita
Y
,
Kobayashi
K
,
Takasaka
N
,
Yoshida
M
,
Hara
H
,
Minagawa
S
,
Wakui
H
,
Fujii
S
,
Kojima
J
,
Shimizu
K
,
Numata
T
,
Kawaishi
M
,
Odaka
M
,
Morikawa
T
,
Harada
T
,
Nishimura
SL
,
Kaneko
Y
,
Nakayama
K
,
Kuwano
K
.
PARK2‐mediated mitophagy is involved in regulation of HBEC senescence in COPD pathogenesis
.
Autophagy
11
:
547
‐
559
,
2015
.
|
70. |
Jagadeeswaran
R
,
Vazquez
BA
,
Thiruppathi
M
,
Ganesh
BB
,
Ibanez
V
,
Cui
S
,
Engel
JD
,
Diamond
AM
,
Molokie
RE
,
DeSimone
J
,
Lavelle
D
,
Rivers
A
.
Pharmacological inhibition of LSD1 and mTOR reduces mitochondrial retention and associated ROS levels in the red blood cells of sickle cell disease
.
Exp Hematol
50
:
46
‐
52
,
2017
.
|
71. |
Jain
AK
,
Singh
D
,
Dubey
K
,
Maurya
R
,
Pandey
AK
.
Zinc oxide nanoparticles induced gene mutation at the HGPRT locus and cell cycle arrest associated with apoptosis in V‐79 cells
.
J Appl Toxicol
39
:
735
‐
750
,
2019
.
|
72. |
Jin
L
,
Yang
H
,
Fu
J
,
Xue
X
,
Yao
L
,
Qiao
L
.
Association between oxidative DNA damage and the expression of 8‐oxoguanine DNA glycosylase 1 in lung epithelial cells of neonatal rats exposed to hyperoxia
.
Mol Med Rep
11
:
4079
‐
4086
,
2015
.
|
73. |
Kamenisch
Y
,
Fousteri
M
,
Knoch
J
,
von
Thaler
AK
,
Fehrenbacher
B
,
Kato
H
,
Becker
T
,
Dolle
ME
,
Kuiper
R
,
Majora
M
,
Schaller
M
,
van der
Horst
GT
,
van
Steeg
H
,
Rocken
M
,
Rapaport
D
,
Krutmann
J
,
Mullenders
LH
,
Berneburg
M
.
Proteins of nucleotide and base excision repair pathways interact in mitochondria to protect from loss of subcutaneous fat, a hallmark of aging
.
J Exp Med
207
:
379
‐
390
,
2010
.
|
74. |
Kasiviswanathan
R
,
Minko
IG
,
Lloyd
RS
,
Copeland
WC
.
Translesion synthesis past acrolein‐derived DNA adducts by human mitochondrial DNA polymerase gamma
.
J Biol Chem
288
:
14247
‐
14255
,
2013
.
|
75. |
Kenney
MC
,
Chwa
M
,
Atilano
SR
,
Falatoonzadeh
P
,
Ramirez
C
,
Malik
D
,
Tarek
M
,
Caceres‐del‐Carpio
J
,
Nesburn
AB
,
Boyer
DS
,
Kuppermann
BD
,
Vawter
M
,
Jazwinski
SM
,
Miceli
M
,
Wallace
DC
,
Udar
N
.
Inherited mitochondrial DNA variants can affect complement, inflammation and apoptosis pathways: Insights into mitochondrial‐nuclear interactions
.
Hum Mol Genet
23
:
3537
‐
3551
,
2014
.
|
76. |
Kim
R
,
Emi
M
,
Tanabe
K
.
Caspase‐dependent and ‐independent cell death pathways after DNA damage (Review)
.
Oncol Rep
14
:
595
‐
599
,
2005
.
|
77. |
Kim
SJ
,
Mehta
HH
,
Wan
J
,
Kuehnemann
C
,
Chen
J
,
Hu
JF
,
Hoffman
AR
,
Cohen
P
.
Mitochondrial peptides modulate mitochondrial function during cellular senescence
.
Aging (Albany NY)
10
:
1239
‐
1256
,
2018
.
|
78. |
Kleme
ML
,
Sane
A
,
Garofalo
C
,
Seidman
E
,
Brochiero
E
,
Berthiaume
Y
,
Levy
E
.
CFTR deletion confers mitochondrial dysfunction and disrupts lipid homeostasis in intestinal epithelial cells
.
Nutrients
10
:
2018
.
|
79. |
Kochanek
KD
,
Murphy
SL
,
Xu
J
,
Arias
E
.
Deaths: Final data for 2017
.
National Center for Health Statistics
68
(
9
):
1
‐
77
,
2019
.
|
80. |
Kocher
TD
,
Thomas
WK
,
Meyer
A
,
Edwards
SV
,
Paabo
S
,
Villablanca
FX
,
Wilson
AC
.
Dynamics of mitochondrial DNA evolution in animals: Amplification and sequencing with conserved primers
.
Proc Natl Acad Sci USA
86
:
6196
‐
6200
,
1989
.
|
81. |
Koshikawa
N
,
Akimoto
M
,
Hayashi
JI
,
Nagase
H
,
Takenaga
K
.
Association of predicted pathogenic mutations in mitochondrial ND genes with distant metastasis in NSCLC and colon cancer
.
Sci Rep
7
:
15535
,
2017
.
|
82. |
Kosmider
B
,
Lin
CR
,
Karim
L
,
Tomar
D
,
Vlasenko
L
,
Marchetti
N
,
Bolla
S
,
Madesh
M
,
Criner
GJ
,
Bahmed
K
.
Mitochondrial dysfunction in human primary alveolar type II cells in emphysema
.
EBioMedicine
46
:
305
‐
316
,
2019
.
|
83. |
Kowalska
M
,
Wegierek‐Ciuk
A
,
Brzoska
K
,
Wojewodzka
M
,
Meczynska‐Wielgosz
S
,
Gromadzka‐Ostrowska
J
,
Mruk
R
,
Ovrevik
J
,
Kruszewski
M
,
Lankoff
A
.
Genotoxic potential of diesel exhaust particles from the combustion of first‐ and second‐generation biodiesel fuels‐the FuelHealth project
.
Environ Sci Pollut Res Int
24
:
24223
‐
24234
,
2017
.
|
84. |
Kraja
AT
,
Liu
C
,
Fetterman
JL
,
Graff
M
,
Have
CT
,
Gu
C
,
Yanek
LR
,
Feitosa
MF
,
Arking
DE
,
Chasman
DI
,
Young
K
,
Ligthart
S
,
Hill
WD
,
Weiss
S
,
Luan
J
,
Giulianini
F
,
Li‐Gao
R
,
Hartwig
FP
,
Lin
SJ
,
Wang
L
,
Richardson
TG
,
Yao
J
,
Fernandez
EP
,
Ghanbari
M
,
Wojczynski
MK
,
Lee
WJ
,
Argos
M
,
Armasu
SM
,
Barve
RA
,
Ryan
KA
,
An
P
,
Baranski
TJ
,
Bielinski
SJ
,
Bowden
DW
,
Broeckel
U
,
Christensen
K
,
Chu
AY
,
Corley
J
,
Cox
SR
,
Uitterlinden
AG
,
Rivadeneira
F
,
Cropp
CD
,
Daw
EW
,
van
Heemst
D
,
de
Las Fuentes
L
,
Gao
H
,
Tzoulaki
I
,
Ahluwalia
TS
,
de
Mutsert
R
,
Emery
LS
,
Erzurumluoglu
AM
,
Perry
JA
,
Fu
M
,
Forouhi
NG
,
Gu
Z
,
Hai
Y
,
Harris
SE
,
Hemani
G
,
Hunt
SC
,
Irvin
MR
,
Jonsson
AE
,
Justice
AE
,
Kerrison
ND
,
Larson
NB
,
Lin
KH
,
Love‐Gregory
LD
,
Mathias
RA
,
Lee
JH
,
Nauck
M
,
Noordam
R
,
Ong
KK
,
Pankow
J
,
Patki
A
,
Pattie
A
,
Petersmann
A
,
Qi
Q
,
Ribel‐Madsen
R
,
Rohde
R
,
Sandow
K
,
Schnurr
TM
,
Sofer
T
,
Starr
JM
,
Taylor
AM
,
Teumer
A
,
Timpson
NJ
,
de
Haan
HG
,
Wang
Y
,
Weeke
PE
,
Williams
C
,
Wu
H
,
Yang
W
,
Zeng
D
,
Witte
DR
,
Weir
BS
,
Wareham
NJ
,
Vestergaard
H
,
Turner
ST
,
Torp‐Pedersen
C
,
Stergiakouli
E
,
Sheu
WH
,
Rosendaal
FR
,
Ikram
MA
,
Franco
OH
,
Ridker
PM
,
Perls
TT
,
Pedersen
O
,
Nohr
EA
,
Newman
AB
,
Linneberg
A
,
Langenberg
C
,
Kilpelainen
TO
,
Kardia
SLR
,
Jorgensen
ME
,
Jorgensen
T
,
Sorensen
TIA
,
Homuth
G
,
Hansen
T
,
Goodarzi
MO
,
Deary
IJ
,
Christensen
C
,
Chen
YI
,
Chakravarti
A
,
Brandslund
I
,
Bonnelykke
K
,
Taylor
KD
,
Wilson
JG
,
Rodriguez
S
,
Davies
G
,
Horta
BL
,
Thyagarajan
B
,
Rao
DC
,
Grarup
N
,
Davila‐Roman
VG
,
Hudson
G
,
Guo
X
,
Arnett
DK
,
Hayward
C
,
Vaidya
D
,
Mook‐Kanamori
DO
,
Tiwari
HK
,
Levy
D
,
Loos
RJF
,
Dehghan
A
,
Elliott
P
,
Malik
AN
,
Scott
RA
,
Becker
DM
,
de
Andrade
M
,
Province
MA
,
Meigs
JB
,
Rotter
JI
,
North
KE
.
Associations of mitochondrial and nuclear mitochondrial variants and genes with seven metabolic traits
.
Am J Hum Genet
104
:
112
‐
138
,
2019
.
|
85. |
Kundumani‐Sridharan
V
,
Subramani
J
,
Raghavan
S
,
Maiti
GP
,
Owens
C
,
Walker
T
,
Wasnick
J
,
Idell
S
,
Das
KC
.
Short‐duration hyperoxia causes genotoxicity in mouse lungs: Protection by volatile anesthetic isoflurane
.
Am J Physiol Lung Cell Mol Physiol
316
:
L903
‐
L917
,
2019
.
|
86. |
Kurashima
K
,
Takaku
Y
,
Ohta
C
,
Takayanagi
N
,
Yanagisawa
T
,
Kanauchi
T
,
Takahashi
O
.
Smoking history and emphysema in asthma‐COPD overlap
.
Int J Chron Obstruct Pulmon Dis
12
:
3523
‐
3532
,
2017
.
|
87. |
Kuruvilla
S
,
Qualls
CW
Jr
,
Tyler
RD
,
Witherspoon
SM
,
Benavides
GR
,
Yoon
LW
,
Dold
K
,
Brown
RH
,
Sangiah
S
,
Morgan
KT
.
Effects of minimally toxic levels of carbonyl cyanide P‐(trifluoromethoxy) phenylhydrazone (FCCP), elucidated through differential gene expression with biochemical and morphological correlations
.
Toxicol Sci
73
:
348
‐
361
,
2003
.
|
88. |
Lake
NJ
,
Bird
MJ
,
Isohanni
P
,
Paetau
A
.
Leigh syndrome: Neuropathology and pathogenesis
.
J Neuropathol Exp Neurol
74
:
482
‐
492
,
2015
.
|
89. |
Lane
N
.
Serial endosymbiosis or singular event at the origin of eukaryotes?
J Theor Biol
434
:
58
‐
67
,
2017
.
|
90. |
Li
F
,
Xu
M
,
Wang
M
,
Wang
L
,
Wang
H
,
Zhang
H
,
Chen
Y
,
Gong
J
,
Zhang
JJ
,
Adcock
IM
,
Chung
KF
,
Zhou
X
.
Roles of mitochondrial ROS and NLRP3 inflammasome in multiple ozone‐induced lung inflammation and emphysema
.
Respir Res
19
:
230
,
2018
.
|
91. |
Li
S
,
Wu
J
,
Zhu
S
,
Liu
YJ
,
Chen
J
.
Disease‐associated plasmacytoid dendritic cells
.
Front Immunol
8
:
1268
,
2017
.
|
92. |
Lim
RH
,
Kobzik
L
,
Dahl
M
.
Risk for asthma in offspring of asthmatic mothers versus fathers: A meta‐analysis
.
PLoS One
5
:
e10134
,
2010
.
|
93. |
Liu
B
,
Du
Q
,
Chen
L
,
Fu
G
,
Li
S
,
Fu
L
,
Zhang
X
,
Ma
C
,
Bin
C
.
CpG methylation patterns of human mitochondrial DNA
.
Sci Rep
6
:
23421
,
2016
.
|
94. |
Liu
X
,
Chen
Z
.
The pathophysiological role of mitochondrial oxidative stress in lung diseases
.
J Transl Med
15
:
207
,
2017
.
|
95. |
Longley
MJ
,
Nguyen
D
,
Kunkel
TA
,
Copeland
WC
.
The fidelity of human DNA polymerase gamma with and without exonucleolytic proofreading and the p55 accessory subunit
.
J Biol Chem
276
:
38555
‐
38562
,
2001
.
|
96. |
Ma
C
,
Beyer
AM
,
Durand
M
,
Clough
AV
,
Zhu
D
,
Norwood Toro
L
,
Terashvili
M
,
Ebben
JD
,
Hill
RB
,
Audi
SH
,
Medhora
M
,
Jacobs
ER
.
Hyperoxia causes mitochondrial fragmentation in pulmonary endothelial cells by increasing expression of pro‐fission proteins
.
Arterioscler Thromb Vasc Biol
38
:
622
‐
635
,
2018
.
|
97. |
Ma
H
,
Lee
Y
,
Hayama
T
,
Van Dyken
C
,
Marti‐Gutierrez
N
,
Li
Y
,
Ahmed
R
,
Koski
A
,
Kang
E
,
Darby
H
,
Gonmanee
T
,
Park
Y
,
Wolf
DP
,
Jai Kim
C
,
Mitalipov
S
.
Germline and somatic mtDNA mutations in mouse aging
.
PLoS One
13
:
e0201304
,
2018
.
|
98. |
Maiuri
L
,
Raia
V
,
Kroemer
G
.
Strategies for the etiological therapy of cystic fibrosis
.
Cell Death Differ
24
:
1825
‐
1844
,
2017
.
|
99. |
Marchi
S
,
Patergnani
S
,
Missiroli
S
,
Morciano
G
,
Rimessi
A
,
Wieckowski
MR
,
Giorgi
C
,
Pinton
P
.
Mitochondrial and endoplasmic reticulum calcium homeostasis and cell death
.
Cell Calcium
69
:
62
‐
72
,
2018
.
|
100. |
Masayesva
BG
,
Mambo
E
,
Taylor
RJ
,
Goloubeva
OG
,
Zhou
S
,
Cohen
Y
,
Minhas
K
,
Koch
W
,
Sciubba
J
,
Alberg
AJ
,
Sidransky
D
,
Califano
J
.
Mitochondrial DNA content increase in response to cigarette smoking
.
Cancer Epidemiol Biomark Prev
15
:
19
‐
24
,
2006
.
|
101. |
Matzenbacher
CA
,
Garcia
AL
,
Dos Santos
MS
,
Nicolau
CC
,
Premoli
S
,
Correa
DS
,
de
Souza
CT
,
Niekraszewicz
L
,
Dias
JF
,
Delgado
TV
,
Kalkreuth
W
,
Grivicich
I
,
da
Silva
J
.
DNA damage induced by coal dust, fly and bottom ash from coal combustion evaluated using the micronucleus test and comet assay in vitro
.
J Hazard Mater
324
:
781
‐
788
,
2017
.
|
102. |
Mechta
M
,
Ingerslev
LR
,
Fabre
O
,
Picard
M
,
Barres
R
.
Evidence suggesting absence of mitochondrial DNA methylation
.
Front Genet
8
:
166
,
2017
.
|
103. |
Meng
X
,
Schwarzenbach
H
,
Yang
Y
,
Muller
V
,
Li
N
,
Tian
D
,
Shen
Y
,
Gong
Z
.
Circulating mitochondrial DNA is linked to progression and prognosis of epithelial ovarian cancer
.
Transl Oncol
12
:
1213
‐
1220
,
2019
.
|
104. |
Mishra
M
,
Kowluru
RA
.
DNA methylation—a potential source of mitochondria DNA base mismatch in the development of diabetic retinopathy
.
Mol Neurobiol
56
:
88
‐
101
,
2019
.
|
105. |
Mohamed
HRH
.
Estimation of genomic instability and mitochondrial DNA damage induction by acute oral administration of calcium hydroxide normal‐ and nano‐ particles in mice
.
Toxicol Lett
304
:
1
‐
12
,
2019
.
|
106. |
Moller
P
,
Jacobsen
NR
.
Weight of evidence analysis for assessing the genotoxic potential of carbon nanotubes
.
Crit Rev Toxicol
47
:
867
‐
884
,
2017
.
|
107. |
Montava‐Garriga
L
,
Ganley
IG
.
Outstanding questions in mitophagy: What we do and do not know
.
J Mol Biol
,
2019
.
|
108. |
Nakabeppu
Y
.
Regulation of intracellular localization of human MTH1, OGG1, and MYH proteins for repair of oxidative DNA damage
.
Prog Nucleic Acid Res Mol Biol
68
:
75
‐
94
,
2001
.
|
109. |
Narala
VR
,
Fukumoto
J
,
Hernandez‐Cuervo
H
,
Patil
SS
,
Krishnamurthy
S
,
Breitzig
M
,
Galam
L
,
Soundararajan
R
,
Lockey
RF
,
Kolliputi
N
.
Akap1 genetic deletion increases the severity of hyperoxia‐induced acute lung injury in mice
.
Am J Physiol Lung Cell Mol Physiol
314
:
L860
‐
L870
,
2018
.
|
110. |
Nido
GS
,
Dolle
C
,
Flones
I
,
Tuppen
HA
,
Alves
G
,
Tysnes
OB
,
Haugarvoll
K
,
Tzoulis
C
.
Ultradeep mapping of neuronal mitochondrial deletions in Parkinson's disease
.
Neurobiol Aging
63
:
120
‐
127
,
2018
.
|
111. |
Nurmagambetov
T
,
Kuwahara
R
,
Garbe
P
.
The economic burden of asthma in the united states, 2008‐2013
.
Ann Am Thorac Soc
15
:
348
‐
356
,
2018
.
|
112. |
Oka
T
,
Hikoso
S
,
Yamaguchi
O
,
Taneike
M
,
Takeda
T
,
Tamai
T
,
Oyabu
J
,
Murakawa
T
,
Nakayama
H
,
Nishida
K
,
Akira
S
,
Yamamoto
A
,
Komuro
I
,
Otsu
K
.
Mitochondrial DNA that escapes from autophagy causes inflammation and heart failure
.
Nature
485
:
251
‐
255
,
2012
.
|
113. |
Onishi
M
,
Saito
M
,
Sokuza
Y
,
Mori
C
,
Nishikawa
T
,
Shimizu
K
,
Sugata
E
,
Tsujiuchi
T
.
Numerical changes in the mitochondrial DNA displacement loop in lung lesions induced by N‐nitrosobis(2‐hydroxypropyl)amine in rats
.
Mutat Res
638
:
133
‐
138
,
2008
.
|
114. |
Otsuka
K
,
Yamada
K
,
Taquahashi
Y
,
Arakaki
R
,
Ushio
A
,
Saito
M
,
Yamada
A
,
Tsunematsu
T
,
Kudo
Y
,
Kanno
J
,
Ishimaru
N
.
Long‐term polarization of alveolar macrophages to a profibrotic phenotype after inhalation exposure to multi‐wall carbon nanotubes
.
PLoS One
13
:
e0205702
,
2018
.
|
115. |
Owa
C
,
Poulin
M
,
Yan
L
,
Shioda
T
.
Technical adequacy of bisulfite sequencing and pyrosequencing for detection of mitochondrial DNA methylation: Sources and avoidance of false‐positive detection
.
PLoS One
13
:
e0192722
,
2018
.
|
116. |
Oyewole
AO
,
Birch‐Machin
MA
.
Mitochondria‐targeted antioxidants
.
FASEB J
29
:
4766
‐
4771
,
2015
.
|
117. |
Pasha
HA
,
Rezk
NA
,
Riad
MA
.
Circulating cell free nuclear DNA, mitochondrial DNA and global DNA methylation: Potential noninvasive biomarkers for breast cancer diagnosis
.
Cancer Investig
37
:
432
‐
439
,
2019
.
|
118. |
Pelclova
D
,
Zdimal
V
,
Komarc
M
,
Vlckova
S
,
Fenclova
Z
,
Ondracek
J
,
Schwarz
J
,
Kostejn
M
,
Kacer
P
,
Dvorackova
S
,
Popov
A
,
Klusackova
P
,
Zakharov
S
,
Bello
D
.
Deep airway inflammation and respiratory disorders in nanocomposite workers
.
Nanomaterials (Basel)
8
:
731
,
2018
.
|
119. |
Pieters
N
,
Koppen
G
,
Smeets
K
,
Napierska
D
,
Plusquin
M
,
De Prins
S
,
Van De Weghe
H
,
Nelen
V
,
Cox
B
,
Cuypers
A
,
Hoet
P
,
Schoeters
G
,
Nawrot
TS
.
Decreased mitochondrial DNA content in association with exposure to polycyclic aromatic hydrocarbons in house dust during wintertime: From a population enquiry to cell culture
.
PLoS One
8
:
e63208
,
2013
.
|
120. |
Pirini
F
,
Guida
E
,
Lawson
F
,
Mancinelli
A
,
Guerrero‐Preston
R
.
Nuclear and mitochondrial DNA alterations in newborns with prenatal exposure to cigarette smoke
.
Int J Environ Res Public Health
12
:
1135
‐
1155
,
2015
.
|
121. |
Pothirat
C
,
Chaiwong
W
,
Liwsrisakun
C
,
Bumroongkit
C
,
Deesomchok
A
,
Theerakittikul
T
,
Limsukon
A
,
Tajarernmuang
P
,
Phetsuk
N
.
Acute effects of air pollutants on daily mortality and hospitalizations due to cardiovascular and respiratory diseases
.
J Thorac Dis
11
:
3070
‐
3083
,
2019
.
|
122. |
Prakash
A
,
Doublie
S
.
Base excision repair in the mitochondria
.
J Cell Biochem
116
:
1490
‐
1499
,
2015
.
|
123. |
Rademann
P
,
Weidinger
A
,
Drechsler
S
,
Meszaros
A
,
Zipperle
J
,
Jafarmadar
M
,
Dumitrescu
S
,
Hacobian
A
,
Ungelenk
L
,
Rostel
F
,
Kaszaki
J
,
Szabo
A
,
Skulachev
VP
,
Bauer
M
,
Bahrami
S
,
Weis
S
,
Kozlov
AV
,
Osuchowski
MF
.
Mitochondria‐targeted antioxidants SkQ1 and mitoTEMPO failed to exert a long‐term beneficial effect in murine polymicrobial sepsis
.
Oxidative Med Cell Longev
2017
:
6412682
,
2017
.
|
124. |
Redondo
M
,
Keyt
H
,
Dhar
R
,
Chalmers
JD
.
Global impact of bronchiectasis and cystic fibrosis
.
Breathe (Sheff)
12
:
222
‐
235
,
2016
.
|
125. |
Ross
DW
.
The human genome: Information content and structure
.
Hosp Pract (1995)
34
:
49
‐
54, 56‐60, 65
,
1999
.
|
126. |
Saffran
HA
,
Pare
JM
,
Corcoran
JA
,
Weller
SK
,
Smiley
JR
.
Herpes simplex virus eliminates host mitochondrial DNA
.
EMBO Rep
8
:
188
‐
193
,
2007
.
|
127. |
Scheibye‐Knudsen
M
,
Tseng
A
,
Borch Jensen
M
,
Scheibye‐Alsing
K
,
Fang
EF
,
Iyama
T
,
Bharti
SK
,
Marosi
K
,
Froetscher
L
,
Kassahun
H
,
Eckley
DM
,
Maul
RW
,
Bastian
P
,
De
S
,
Ghosh
S
,
Nilsen
H
,
Goldberg
IG
,
Mattson
MP
,
Wilson
DM
3rd
,
Brosh
RM
Jr
,
Gorospe
M
,
Bohr
VA
.
Cockayne syndrome group A and B proteins converge on transcription‐linked resolution of non‐B DNA
.
Proc Natl Acad Sci USA
113
:
12502
‐
12507
,
2016
.
|
128. |
Schon
EA
,
DiMauro
S
,
Hirano
M
.
Human mitochondrial DNA: Roles of inherited and somatic mutations
.
Nat Rev Genet
13
:
878
‐
890
,
2012
.
|
129. |
Sebag
SC
,
Koval
OM
,
Paschke
JD
,
Winters
CJ
,
Jaffer
OA
,
Dworski
R
,
Sutterwala
FS
,
Anderson
ME
,
Grumbach
IM
.
Mitochondrial CaMKII inhibition in airway epithelium protects against allergic asthma
.
JCI Insight
2
:
e88297
,
2017
.
|
130. |
Shimada
K
,
Crother
TR
,
Karlin
J
,
Dagvadorj
J
,
Chiba
N
,
Chen
S
,
Ramanujan
VK
,
Wolf
AJ
,
Vergnes
L
,
Ojcius
DM
,
Rentsendorj
A
,
Vargas
M
,
Guerrero
C
,
Wang
Y
,
Fitzgerald
KA
,
Underhill
DM
,
Town
T
,
Arditi
M
.
Oxidized mitochondrial DNA activates the NLRP3 inflammasome during apoptosis
.
Immunity
36
:
401
‐
414
,
2012
.
|
131. |
Shock
LS
,
Thakkar
PV
,
Peterson
EJ
,
Moran
RG
,
Taylor
SM
.
DNA methyltransferase 1, cytosine methylation, and cytosine hydroxymethylation in mammalian mitochondria
.
Proc Natl Acad Sci USA
108
:
3630
‐
3635
,
2011
.
|
132. |
Siddiqui
WA
,
Ahad
A
,
Ahsan
H
.
The mystery of BCL2 family: Bcl‐2 proteins and apoptosis: An update
.
Arch Toxicol
89
:
289
‐
317
,
2015
.
|
133. |
Siegmund
SE
,
Yang
H
,
Sharma
R
,
Javors
M
,
Skinner
O
,
Mootha
V
,
Hirano
M
,
Schon
EA
.
Low‐dose rapamycin extends lifespan in a mouse model of mtDNA depletion syndrome
.
Hum Mol Genet
26
:
4588
‐
4605
,
2017
.
|
134. |
Smigrodzki
RM
,
Khan
SM
.
Mitochondrial microheteroplasmy and a theory of aging and age‐related disease
.
Rejuvenation Res
8
:
172
‐
198
,
2005
.
|
135. |
Snyder
RJ
,
Verhein
KC
,
Vellers
HL
,
Burkholder
AB
,
Garantziotis
S
,
Kleeberger
SR
.
Multi‐walled carbon nanotubes upregulate mitochondrial gene expression and trigger mitochondrial dysfunction in primary human bronchial epithelial cells
.
Nanotoxicology
1‐18
,
2019
.
|
136. |
Snyder
RJ
,
Verhein
KC
,
Vellers
HL
,
Burkholder
AB
,
Peden
DB
,
Garantziotis
S
,
Randell
SH
,
Kleeberger
SR
.
Dysregulation of mitochondrial RNA processing in bronchial epithelial cells of individuals with severe inflammatory lung diseases
.
J Allergy Clin Immunol
,
2019
(unpublished manuscript).
|
137. |
Sobenin
IA
,
Mitrofanov
KY
,
Zhelankin
AV
,
Sazonova
MA
,
Postnov
AY
,
Revin
VV
,
Bobryshev
YV
,
Orekhov
AN
.
Quantitative assessment of heteroplasmy of mitochondrial genome: Perspectives in diagnostics and methodological pitfalls
.
Biomed Res Int
2014
:
292017
,
2014
.
|
138. |
Sreekumar
PG
,
Ishikawa
K
,
Spee
C
,
Mehta
HH
,
Wan
J
,
Yen
K
,
Cohen
P
,
Kannan
R
,
Hinton
DR
.
The mitochondrial‐derived peptide humanin protects RPE cells from oxidative stress, senescence, and mitochondrial dysfunction
.
Invest Ophthalmol Vis Sci
57
:
1238
‐
1253
,
2016
.
|
139. |
Stein
A
,
Sia
EA
.
Mitochondrial DNA repair and damage tolerance
.
Front Biosci (Landmark Ed)
22
:
920
‐
943
,
2017
.
|
140. |
Strobel
S
,
Grunblatt
E
,
Heinsen
H
,
Riederer
P
,
Espach
T
,
Meder
M
,
Monoranu
CM
.
Astrocyte‐ and microglia‐specific mitochondrial DNA deletions levels in sporadic alzheimer's disease
.
J Alzheimers Dis
67
:
149
‐
157
,
2019
.
|
141. |
Sun
S
,
Sursal
T
,
Adibnia
Y
,
Zhao
C
,
Zheng
Y
,
Li
H
,
Otterbein
LE
,
Hauser
CJ
,
Itagaki
K
.
Mitochondrial DAMPs increase endothelial permeability through neutrophil dependent and independent pathways
.
PLoS One
8
:
e59989
,
2013
.
|
142. |
Svenningsen
S
,
Nair
P
.
Asthma endotypes and an overview of targeted therapy for asthma
.
Front Med (Lausanne)
4
:
158
,
2017
.
|
143. |
Swartzlander
DB
,
Griffiths
LM
,
Lee
J
,
Degtyareva
NP
,
Doetsch
PW
,
Corbett
AH
.
Regulation of base excision repair: Ntg1 nuclear and mitochondrial dynamic localization in response to genotoxic stress
.
Nucleic Acids Res
38
:
3963
‐
3974
,
2010
.
|
144. |
Szczesny
B
,
Marcatti
M
,
Ahmad
A
,
Montalbano
M
,
Brunyanszki
A
,
Bibli
SI
,
Papapetropoulos
A
,
Szabo
C
.
Mitochondrial DNA damage and subsequent activation of Z‐DNA binding protein 1 links oxidative stress to inflammation in epithelial cells
.
Sci Rep
8
:
914
,
2018
.
|
145. |
Tadi
SK
,
Sebastian
R
,
Dahal
S
,
Babu
RK
,
Choudhary
B
,
Raghavan
SC
.
Microhomology‐mediated end joining is the principal mediator of double‐strand break repair during mitochondrial DNA lesions
.
Mol Biol Cell
27
:
223
‐
235
,
2016
.
|
146. |
Takahashi
R
,
Deveraux
Q
,
Tamm
I
,
Welsh
K
,
Assa‐Munt
N
,
Salvesen
GS
,
Reed
JC
.
A single BIR domain of XIAP sufficient for inhibiting caspases
.
J Biol Chem
273
:
7787
‐
7790
,
1998
.
|
147. |
Takao
M
,
Zhang
QM
,
Yonei
S
,
Yasui
A
.
Differential subcellular localization of human MutY homolog (hMYH) and the functional activity of adenine: 8‐oxoguanine DNA glycosylase
.
Nucleic Acids Res
27
:
3638
‐
3644
,
1999
.
|
148. |
Taleei
R
,
Nikjoo
H
.
The non‐homologous end‐joining (NHEJ) pathway for the repair of DNA double‐strand breaks: I. A mathematical model
.
Radiat Res
179
:
530
‐
539
,
2013
.
|
149. |
Tan
YB
,
Mulekar
S
,
Gorodnya
O
,
Weyant
MJ
,
Zamora
MR
,
Simmons
JD
,
Machuka
T
,
Gillespie
MN
.
Pharmacologic protection of mitochondrial DNA integrity may afford a new strategy for suppressing lung ischemia‐reperfusion injury
.
Ann Am Thorac Soc
14
:
S210
‐
S215
,
2017
.
|
150. |
Tan
YB
,
Pastukh
VM
,
Gorodnya
OM
,
Mulekar
MS
,
Simmons
JD
,
Machuca
TN
,
Beaver
TM
,
Wilson
GL
, and
Gillespie
MN
. Enhanced
Mitochondrial
DNA
Repair resuscitates transplantable lungs donated after circulatory death
.
J Surg Res
245
:
273
‐
280
,
2020
.
|
151. |
Thurairajah
K
,
Briggs
GD
,
Balogh
ZJ
.
The source of cell‐free mitochondrial DNA in trauma and potential therapeutic strategies
.
Eur J Trauma Emerg Surg
44
:
325
‐
334
,
2018
.
|
152. |
Twig
G
,
Shirihai
OS
.
The interplay between mitochondrial dynamics and mitophagy
.
Antioxid Redox Signal
14
:
1939
‐
1951
,
2011
.
|
153. |
Unuma
K
,
Aki
T
,
Funakoshi
T
,
Hashimoto
K
,
Uemura
K
.
Extrusion of mitochondrial contents from lipopolysaccharide‐stimulated cells: Involvement of autophagy
.
Autophagy
11
:
1520
‐
1536
,
2015
.
|
154. |
Valero
A
,
Olaguibel
J
,
Delgado
J
,
Plaza
V
,
Alvarez
F
,
Molina
J
,
Mascaros
E
,
Quirce
S
.
Dilemmas and new paradigms in asthma management
.
J Investig Allergol Clin Immunol
29
:
15
‐
23
,
2019
.
|
155. |
van der
Wijst
MG
,
van
Tilburg
AY
,
Ruiters
MH
,
Rots
MG
.
Experimental mitochondria‐targeted DNA methylation identifies GpC methylation, not CpG methylation, as potential regulator of mitochondrial gene expression
.
Sci Rep
7
:
177
,
2017
.
|
156. |
van
Doorninck
JH
,
French
PJ
,
Verbeek
E
,
Peters
RH
,
Morreau
H
,
Bijman
J
,
Scholte
BJ
.
A mouse model for the cystic fibrosis delta F508 mutation
.
EMBO J
14
:
4403
‐
4411
,
1995
.
|
157. |
Vasileiou
PVS
,
Mourouzis
I
,
Pantos
C
.
Principal aspects regarding the maintenance of mammalian mitochondrial genome integrity
.
Int J Mol Sci
18
:
1821
,
2017
.
|
158. |
Vellers
HL
,
Verhein
KC
,
Burkholder
AB
,
Lee
J
,
Kim
Y
,
Lightfoot
JT
,
Shi
M
,
Weinberg
CR
,
Sarzynski
MA
,
Bouchard
C
,
Kleeberger
SR
.
Association between mitochondrial DNA sequence variants and VO
2 max
trainability
.
Med Sci Sport Exer
52
:
2303
‐
2309
,
2020
.
|
159. |
Velsor
LW
,
Kariya
C
,
Kachadourian
R
,
Day
BJ
.
Mitochondrial oxidative stress in the lungs of cystic fibrosis transmembrane conductance regulator protein mutant mice
.
Am J Respir Cell Mol Biol
35
:
579
‐
586
,
2006
.
|
160. |
Victorin
K
.
Genotoxicity and carcinogenicity of ozone
.
Scand J Work Environ Health
22
(
Suppl 3
):
42
‐
51
,
1996
.
|
161. |
Volobueva
A
,
Grechko
A
,
Yet
SF
,
Sobenin
I
,
Orekhov
A
.
Changes in mitochondrial genome associated with predisposition to atherosclerosis and related disease
.
Biomolecules
9
:
377
,
2019
.
|
162. |
Vos
S
,
Nawrot
TS
,
Martens
DS
,
Byun
HM
,
Janssen
BG
.
Mitochondrial DNA methylation in placental tissue: A proof of concept study by means of prenatal environmental stressors
.
Epigenetics
1‐11
,
2020
.
|
163. |
Wallace
DC
.
A mitochondrial paradigm of metabolic and degenerative diseases, aging, and cancer: A dawn for evolutionary medicine
.
Annu Rev Genet
39
:
359
‐
407
,
2005
.
|
164. |
Wallace
DC
.
Mitochondrial DNA mutations in disease and aging
.
Environ Mol Mutagen
51
:
440
‐
450
,
2010
.
|
165. |
Wallace
DC
,
Chalkia
D
.
Mitochondrial DNA genetics and the heteroplasmy conundrum in evolution and disease
.
Cold Spring Harb Perspect Biol
5
:
a021220
,
2013
.
|
166. |
Wang
F
,
Li
C
,
Liu
W
,
Jin
Y
.
Oxidative damage and genotoxic effect in mice caused by sub‐chronic exposure to low‐dose volatile organic compounds
.
Inhal Toxicol
25
:
235
‐
242
,
2013
.
|
167. |
Wang
IJ
,
Karmaus
WJ
.
Oxidative stress‐related genetic variants may modify associations of phthalate exposures with asthma
.
Int J Environ Res Public Health
14
,
2017
.
|
168. |
Wang
J
,
Che
B
,
Zhang
LW
,
Dong
G
,
Luo
Q
,
Xin
L
.
Comparative genotoxicity of silver nanoparticles in human liver HepG2 and lung epithelial A549 cells
.
J Appl Toxicol
37
:
495
‐
501
,
2017
.
|
169. |
West
AP
,
Shadel
GS
.
Mitochondrial DNA in innate immune responses and inflammatory pathology
.
Nat Rev Immunol
17
:
363
‐
375
,
2017
.
|
170. |
Wood
ZA
,
Schroder
E
,
Robin Harris
J
,
Poole
LB
.
Structure, mechanism and regulation of peroxiredoxins
.
Trends Biochem Sci
28
:
32
‐
40
,
2003
.
|
171. |
Wu
S
,
Ni
Y
,
Li
H
,
Pan
L
,
Yang
D
,
Baccarelli
AA
,
Deng
F
,
Chen
Y
,
Shima
M
,
Guo
X
.
Short‐term exposure to high ambient air pollution increases airway inflammation and respiratory symptoms in chronic obstructive pulmonary disease patients in Beijing, China
.
Environ Int
94
:
76
‐
82
,
2016
.
|
172. |
Xia
Y
,
Chen
R
,
Wang
C
,
Cai
J
,
Wang
L
,
Zhao
Z
,
Qian
J
,
Kan
H
.
Ambient air pollution, blood mitochondrial DNA copy number and telomere length in a panel of diabetes patients
.
Inhal Toxicol
27
:
481
‐
487
,
2015
.
|
173. |
Xu
M
,
Wang
L
,
Wang
M
,
Wang
H
,
Zhang
H
,
Chen
Y
,
Wang
X
,
Gong
J
,
Zhang
JJ
,
Adcock
IM
,
Chung
KF
,
Li
F
.
Mitochondrial ROS and NLRP3 inflammasome in acute ozone‐induced murine model of airway inflammation and bronchial hyperresponsiveness
.
Free Radic Res
53
:
780
‐
790
,
2019
.
|
174. |
Xu
Y
,
Li
H
,
Hedmer
M
,
Hossain
MB
,
Tinnerberg
H
,
Broberg
K
,
Albin
M
.
Occupational exposure to particles and mitochondrial DNA— relevance for blood pressure
.
Environ Health
16
:
22
,
2017
.
|
175. |
Yucesoy
B
,
Johnson
VJ
,
Lummus
ZL
,
Kissling
GE
,
Fluharty
K
,
Gautrin
D
,
Malo
JL
,
Cartier
A
,
Boulet
LP
,
Sastre
J
,
Quirce
S
,
Germolec
DR
,
Tarlo
SM
,
Cruz
MJ
,
Munoz
X
,
Luster
MI
,
Bernstein
DI
.
Genetic variants in antioxidant genes are associated with diisocyanate‐induced asthma
.
Toxicol Sci
129
:
166
‐
173
,
2012
.
|
176. |
Yue
L
,
Yao
H
.
Mitochondrial dysfunction in inflammatory responses and cellular senescence: Pathogenesis and pharmacological targets for chronic lung diseases
.
Br J Pharmacol
173
:
2305
‐
2318
,
2016
.
|
177. |
Zhang
Q
,
Itagaki
K
,
Hauser
CJ
.
Mitochondrial DNA is released by shock and activates neutrophils via p38 map kinase
.
Shock
34
:
55
‐
59
,
2010
.
|
178. |
Zheng
S
,
Wang
C
,
Qian
G
,
Wu
G
,
Guo
R
,
Li
Q
,
Chen
Y
,
Li
J
,
Li
H
,
He
B
,
Chen
H
,
Ji
F
.
Role of mtDNA haplogroups in COPD susceptibility in a southwestern Han Chinese population
.
Free Radic Biol Med
53
:
473
‐
481
,
2012
.
|
179. |
Zhu
JH
,
Gusdon
AM
,
Cimen
H
,
Van Houten
B
,
Koc
E
,
Chu
CT
.
Impaired mitochondrial biogenesis contributes to depletion of functional mitochondria in chronic MPP+ toxicity: Dual roles for ERK1/2
.
Cell Death Dis
3
:
e312
,
2012
.
|
180. |
Zinovkina
LA
.
Mechanisms of mitochondrial DNA repair in mammals
.
Biochemistry (Mosc)
83
:
233
‐
249
,
2018
.
|
181. |
Zou
Z
,
Chen
J
,
Yang
J
,
Bai
X
.
Targeted inhibition of rictor/mTORC2 in cancer treatment: A new era after rapamycin
.
Curr Cancer Drug Targets
16
:
288
‐
304
,
2016
.
|